Leukocyte
Adhesion Deficiency Web Site
IUPHAR
RECEPTOR DATABASE - HOME
Guide to Receptors and Channels
(GRAC)
IUPHAR/BPS Guide to
PHARMACOLOGY
STITCH:
chemical assocation networks
The
International Molecular Exchange Consortium
WikiGenes
- Evolutionary Knowledge
Pathguide:
the pathway resource list
DAVID
Functional Annotation Bioinformatics Microarray Analysis
Gene
Expression Atlas - Large Scale Meta-Analysis of Public Microarray Data
PIR
[Protein Information Resource]
RNA Seq Atlas - News |
Medicalgenomics
BioGPS - your Gene Portal System
Mammalian
Protein Localization Database
Pawson
Lab Research on Domains
The ELM
Linear Motifs resource
DOMINE: Database of
Protein Domain Interactions
Homepage of the Database
for Multivalent Protein Systems
STITCH:
chemical assocation networks
PharmGKB:
The Pharmacogenetics and Pharmacogenomics Knowledge Base
BPS/IUPHAR Guide to
Pharmacology | Home
KEA - Kinase Enrichment Analysis
Kinexus-Antibody array database
Proteins with commercially
available, phosphorylation site-specific, antibodies
PIPs: Human
Protein-Protein Interaction Prediction
psicquic -
Project Hosting on Google Code
APID (Agile Protein
Interaction DataAnalizer)
CORUM – Mammalian protein
complexes
STITCH:
chemical assocation networks
HIV-1, Human Protein
Interaction Database
Extracellular Matrix
Interaction DB
MatrixDB
- Extracellular Matrix interactions DataBase
Protein-RNA
Interface Database (PRIDB)
Home
| The International Molecular Exchange Consortium
The
European Lipidomics Initiative; Shaping the life
sciences
Pathguide:
the pathway resource list
BioCyc |
Pathway/Genome Databases and Pathway Tools Software
NCI
Pathway Interaction Database
C O N S O R T I U
M F O R F U N C T I O N A
L G L Y C O M I C S
NCI
Pathway Interaction Database
path2models
- Systematic creation of quantitative models from pathway databases
Interactive Pathways &
Processes
Pathway Map: DNA damage_Role of SUMO in
p53 regulation | Map Search (FREE!)
Data base
of quantitative signaling
SABIO
Reaction Kinetics Database (last software update 2011/11/21 09:38)
Homo Sapiens Comprehensive Model
Collection
Worm Developmental Dynamics
Database
PHOGEMON
manual - sensori FRET
InnateDB: Systems Biology of the Innate
Immune Response
Immunological Genome Project
(ImmGen)
Immunome: Database for genes and
proteins of the human immune system
ImmTree:
Evolutionary Trees of the Immune System
MACPAK:
Simulatable Macrophage Pathway Knowledgebase Release 230 24009
Cytoskeleton
Research Portal-best
Human
Intermediate Filament Database
Hedgehog
Signaling Pathway Database
The EF-Hand
Calcium-Binding Proteins
MACPAK:
Simulatable Macrophage Pathway Knowledgebase Release 230 24009
MEROPS - the Peptidase Database
Science/AAAS |
Science Signaling: Resources: ST NetWatch
Mammalian
Protein Localization Database
KEGG PATHWAY:
Pathways in cancer - Homo sapiens (human)
NCICB
Pathway Interaction Database
Catalogue of
Somatic Mutations in Cancer
DataBase of Differentially Expressed
Proteins in Human Cancer (dbDEPC)
Pancreatic Expression Database
CellLineNavigator -
News | Medicalgenomics
cBioPortal
for Cancer Genomics
miRTarBase -
Experimentally Verified miRNA Target Base
miRò - The
miR-Ontology Database
ONCOMINE - CANCER PROFILING
DATABASE
Broad-Novartis Cancer Cell Line
Encyclopedia - great
Dictionary of Cancer Terms - NCI
REPAIRtoire - a database of DNA repair
pathways
IARC -
INTERNATIONAL AGENCY FOR RESEARCH ON CANCER
GeneNameMapping
- Cytoscape Wiki
Pathway Prophet (PathwayProphet) on
Twitter
Systems Biology -
Collective Analysis of Biological Interaction Networks
structureViz: Linking Cytoscape and Chimera
clusterMaker: Creating and Visualizing Cytoscape Clusters
Testing
Instructions - Cytoscape Wiki
Directory
Listing For /annotation/
Unofficial Cytoscape
resources
CyGoose Beta: Cytoscape 2.3
Gaggle
Unofficial Cytoscape
resources
MPlaboratory: Virtual Laboratory
CentiBiN - Centralities in Biological
Networks - Main
pyNetConv -
Network Conversion Tool
WebCell:
an integrated environment for modeling and simulation of cellular networks
online
J-express
Pro - Molmine - Microarray analysis solutions
Prism Server - HeatMap generator
NAViGaTOR - Network Analysis,
Visualization, & Graphing TORonto
GraphCrunch 2 - network
comparison
KNIME |
Konstanz Information Miner
National
Resource for Network Biology
BioNumbers - The Database
of Useful Biological Numbers
PANTHER
- Classifications of Genes and Proteins
DAVID
Functional Annotation Bioinformatics Microarray Analysis
LRpath - Pathway Analysis using
Logistic Regression
GraphWeb:
analysis of biological networks
Network Analysis Tools (NeAT)
- best
MAVisto - Motif Analysis and
Visualisation Tool
CentiBiN - Centralities in
Biological Networks - Main
Circos
- visualize genomes and genomic data
FunNet:
Transcriptional Networks Analysis
NodeXL:
Network Overview, Discovery and Exploration for Excel
International
Journal of Complex Systems in Science
LRpath - Pathway Analysis using
Logistic Regression
S A P I
N | Structural Analysis for Protein Interaction Networks
visualcomplexity.com
| A visual exploration on mapping complex networks
Network
Analysis Group (at IPK)
g:Profiler
- ID converter - very best
Protein Identifier Cross-Reference
Service
ComparisonMatrix –
BridgeDb_(Gary Bader) BEST collection
The
Open Biomedical Ontologies
MGI_4.02 - Mouse
Nomenclature Home Page
GoPubMed
- Ontology based literature search (Biotec/TU-Dresden)
PROTONET: Automatic hierarchical
classification of proteins
ORCAE: Online Resource for
Community Annotation of Eukaryotes
Exploring Genes Using
Functional Disease Ontology Annotations
Disease
and Gene Annotations (DGA) Plugin | BioGPS
DAVID
Functional Annotation Bioinformatics Microarray Analysis
aNT
- Disease-Gene Association
Gene Expression Omnibus (GEO) Main page
GeneSifter:Microarray Data Analysis
7 Keys to Successful Microarray
Data Analysis
ONCOMINE - CANCER PROFILING
DATABASE
BioMed Central |
Microarrays Gateway |
Modomics
- Database of RNA Modifications
The
portal site for the Funtional RNA Project — ncRNA.org
Cancer
Genomics Browser at UCSC
Circos
- visualize genomes and genomic data
Prism Server - HeatMap Generator
Gene
Expression Atlas - Large Scale Meta-Analysis of Public Microarray Data
The
Institute for Systems Biology
http://labs.systemsbiology.net/galitski/hepc/
EUSYSBIO
- The Take-off of European Systems Biology
WTEC
Study on International Research and Development of Systems Biology
Max-Planck-Institut
für Informatik
Laboratory
for Interdisciplinary Technologies in Bioinformatics
Systems
Biology Group Stuttgart
Uri Alon's Molecular Cell Biology
Lab
www.enfin.org :: ENFIN Network
of Excellence
Systems Biology - BioChemWeb.org
ERCIM,
The European Research Consortium for Informatics and Mathematics
Gerstein
Group -- Yale Bioinformatics
http://profs.sci.univr.it/~scardoni/
National
Resource for Network Biology
Genetic Association Database (GAD)
Genes and Disease
-- NCBI Bookshelf
DisGeNET - a Cytoscape
plugin to visualize, integrate, search and analyze gene-disease networks
T1DBase - A Bioinformatics
Resource for Type 1 Diabetes Researchers
ADNI | Alzheimer's
Disease Neuroimaging Initiative
DisGeNET - a
Cytoscape plugin to visualize, integrate, search and analyze gene-disease
networks
DisGeNET - a Cytoscape
plugin to visualize, integrate, search and analyze gene-disease networks
Nature
Reviews Molecular Cell Biology - Perspectives
Table of contents : Nature Reviews Molecular Cell Biology Focus on
Modelling cellular systems
Systems biology -
Wikipedia, the free encyclopedia
Wiley::Interdisciplinary
Reviews: Systems Biology
Current
Protocols in Bioinformatics
2can
Bioinformatics Educational Resource
Bioinformatics Links
Directory
SBW:
The Systems Biology Workbench
MEROPS - the Peptidase Database
PROSPER: Protease substrate
specificity webserver
RINalyzer:
generate networks from protein structure
Structure-Function
Linkage Database
PSI-Nature Structural
Genomics Knowledgebase
PSI-Nature Structural
Genomics Knowledgebase
Disprot
- Database of Protein Disorder
HUPO
Proteomics Standards Initiative
Human Proteome Initiative (HPI)
2nd DASIM workshop LNF-INFN
2006
spectroscopyNOW.com - spectroscopy and spectrometry portal
AECOM CSB Infrared
Spectroscopy
Human Proteomics Initiative (HPI)
HUPO
Proteomics Standards Initiative
ExPASy
Molecular Biology Server
SMART - Simple Modular Architecture
Research
SCOP: Structural Classification of
Proteins
EcoCyc:
Encyclopedia of Escherichia coli Genes and Metabolism
PMG: the Protein Movie
Generator
Predict
Protein Complex - great!
2nd DASIM workshop LNF-INFN
2006
spectroscopyNOW.com - spectroscopy and spectrometry portal
AECOM CSB Infrared
Spectroscopy
FMM:
From Metabolite to Metabolite
SABIO
Reaction Kinetics Database
Mouse
Multiple tissue Metabolome DataBase
Bacche di
Goji Lycium barbarum - Wolfberry Shop | Acquista online bacche tibetane
iSMART:integrated systems biology approach with TCM
TCM Database@Taiwan: The World's Largest
TCM Database for Drug Screening in Silico
FSTA - Food Science and
Technology Abstracts®
KEGG PATHWAY:
Metabolic pathways
MetaCyc Encyclopedia
of Metabolic Pathways
Edinburgh Human Metabolic
Network
The Main Metabolic Pathways on
Internet
ChemAxon
– cheminformatics platforms and desktop applications
Edinburgh Human Metabolic
Network
KEGG PATHWAY:
Metabolic pathways
MetaCyc
Encyclopedia of Metabolic Pathways
iPath: Interactive Pathways Explorer
FMM:
From Metabolite to Metabolite
Rhea
-Annotated reactions database
Metabolic Route Search and
Design
MetaRoute - Fast
search of relevant routes in metabolic networks
LRpath - Pathway Analysis using
Logistic Regression
Scripps
Center For Metabolomics and Mass Spectrometry - METLIN
Amici del Microscopio -
Associazione
Fun
Science Gallery - Scientific Experiments for Amateur Scientists and Schools
Droplet - Microscopy of the Protozoa
Canale di
microscopeitaly - YouTube